Function extracts probable terms from a set of documents. Probable here implies more probable than in a corpus overall.

GetProbableTerms(docnames, dtm, p_terms = NULL)

Arguments

docnames

A character vector of rownames of dtm for set of documents

dtm

A document term matrix of class matrix or dgCMatrix.

p_terms

If not NULL (the default), a numeric vector representing the probability of each term in the corpus whose names correspond to colnames(dtm).

Value

Returns a numeric vector of the format p_terms. The entries of the vectors correspond to the difference in the probability of drawing a term from the set of documents given by docnames and the probability of drawing that term from the corpus overall (p_terms).

Examples

# Load a pre-formatted dtm and topic model data(nih_sample_topic_model) data(nih_sample_dtm) # documents with a topic proportion of .25 or higher for topic 2 mydocs <- rownames(nih_sample_topic_model$theta)[ nih_sample_topic_model$theta[ , 2 ] >= 0.25 ] term_probs <- Matrix::colSums(nih_sample_dtm) / sum(Matrix::colSums(nih_sample_dtm)) GetProbableTerms(docnames = mydocs, dtm = nih_sample_dtm, p_terms = term_probs)
#> folding tosuprttedprtmnt #> -4.632847e-05 -4.632847e-05 #> importation hd #> -4.632847e-05 -4.632847e-05 #> civilian lysosome #> -4.632847e-05 -4.632847e-05 #> capped intimately #> -4.632847e-05 -4.632847e-05 #> cyclic bodies #> -4.632847e-05 -4.632847e-05 #> awarded sf #> -4.632847e-05 -4.632847e-05 #> centrosome boards #> -4.632847e-05 -4.632847e-05 #> developers exploration #> -4.632847e-05 -4.632847e-05 #> challenged mendel #> -4.632847e-05 -4.632847e-05 #> papers embedded #> -4.632847e-05 -4.632847e-05 #> efflux pbps #> -4.632847e-05 -4.632847e-05 #> intellectual nelf #> -4.632847e-05 -4.632847e-05 #> fibrillin pathologic #> -4.632847e-05 -4.632847e-05 #> talairach xenografts #> -4.632847e-05 -4.632847e-05 #> demonstrates book #> -4.632847e-05 -4.632847e-05 #> equilibrium testna #> -4.632847e-05 -4.632847e-05 #> graduated ampars #> -4.632847e-05 -4.632847e-05 #> income exploiting #> -4.632847e-05 -4.632847e-05 #> compositions methylated #> -4.632847e-05 -4.632847e-05 #> qualifications prjctsmmry #> -4.632847e-05 -4.632847e-05 #> tomographic endowed #> -4.632847e-05 -4.632847e-05 #> oklahoma inserts #> -4.632847e-05 -4.632847e-05 #> definitions surfaces #> -4.632847e-05 -4.632847e-05 #> originated prb #> -4.632847e-05 -4.632847e-05 #> questionnaire recroited #> -4.632847e-05 -4.632847e-05 #> investigations stabilization #> -4.632847e-05 -4.632847e-05 #> lemons fostering #> -4.632847e-05 -4.632847e-05 #> myofilament acgih #> -4.632847e-05 -4.632847e-05 #> rejection needing #> -4.632847e-05 -4.632847e-05 #> separation conduits #> -4.632847e-05 -4.632847e-05 #> manner representatives #> -4.632847e-05 -4.632847e-05 #> micronutrient supramolecular #> -4.632847e-05 -4.632847e-05 #> triggering immunosuppression #> 1.180665e-03 1.180665e-03 #> budget summarize #> -4.632847e-05 -4.632847e-05 #> discuss dividing #> -4.632847e-05 -4.632847e-05 #> shifted adequately #> -4.632847e-05 -4.632847e-05 #> mais heterogeneity #> -4.632847e-05 -4.632847e-05 #> cytosolic unable #> -4.632847e-05 -4.632847e-05 #> biologic radioiodine #> -4.632847e-05 1.180665e-03 #> nida thompson #> -4.632847e-05 -4.632847e-05 #> antagonizing atomic #> -4.632847e-05 -4.632847e-05 #> covering remaining #> -4.632847e-05 -4.632847e-05 #> repress tuition #> -4.632847e-05 -4.632847e-05 #> conditioning upregulation #> -4.632847e-05 1.180665e-03 #> trace rtilfo #> -4.632847e-05 -4.632847e-05 #> sequential minimal #> -4.632847e-05 -4.632847e-05 #> silicon forty #> -4.632847e-05 -4.632847e-05 #> uiformispctinprogram restoration #> -4.632847e-05 -4.632847e-05 #> pls avrifictinaditwscmltdo #> -4.632847e-05 -4.632847e-05 #> rheumatoid rimaryregltoryrsosiilityfor #> -4.632847e-05 -4.632847e-05 #> unfolded typing #> -4.632847e-05 -4.632847e-05 #> presentation procedural #> -4.632847e-05 -4.632847e-05 #> issue sustains #> -4.632847e-05 -4.632847e-05 #> multiplying zone #> -4.632847e-05 -4.632847e-05 #> methotrexate proteinase #> -4.632847e-05 -4.632847e-05 #> liver asesment #> -4.632847e-05 -4.632847e-05 #> simply stony #> -4.632847e-05 -4.632847e-05 #> impairs downstream #> -4.632847e-05 -4.632847e-05 #> modulatory craving #> -4.632847e-05 -4.632847e-05 #> reach surrogate #> -4.632847e-05 -4.632847e-05 #> ur trait #> -4.632847e-05 -4.632847e-05 #> metsall secured #> -4.632847e-05 -4.632847e-05 #> microstructure imprint #> -4.632847e-05 -4.632847e-05 #> permit platelets #> -4.632847e-05 -4.632847e-05 #> blocked harbor #> -4.632847e-05 -4.632847e-05 #> toxic consideration #> -4.632847e-05 -4.632847e-05 #> energetic hemagglutinin #> -4.632847e-05 -4.632847e-05 #> participates represented #> -4.632847e-05 -4.632847e-05 #> neuropsychological shewanellae #> -4.632847e-05 -4.632847e-05 #> hydrolyzed plcg #> -4.632847e-05 -4.632847e-05 #> reflect ghanaian #> -4.632847e-05 -4.632847e-05 #> collapse mitigating #> -4.632847e-05 -4.632847e-05 #> missing affiliated #> -4.632847e-05 -4.632847e-05 #> esis concerns #> -4.632847e-05 -4.632847e-05 #> latest metabolized #> -4.632847e-05 -4.632847e-05 #> nested supervise #> -4.632847e-05 -4.632847e-05 #> ofdairy refine #> -4.632847e-05 -4.632847e-05 #> governance helen #> -4.632847e-05 -4.632847e-05 #> bile mentee #> -4.632847e-05 -4.632847e-05 #> glands udca #> -4.632847e-05 -4.632847e-05 #> acutely anderson #> -4.632847e-05 -4.632847e-05 #> station viability #> -4.632847e-05 1.180665e-03 #> virally confidence #> -4.632847e-05 -4.632847e-05 #> proficiency renovating #> -4.632847e-05 -4.632847e-05 #> truncation glucosylceramide #> -4.632847e-05 -4.632847e-05 #> circadian coping #> -4.632847e-05 -4.632847e-05 #> composed elongate #> -4.632847e-05 -4.632847e-05 #> ground dictate #> -4.632847e-05 -4.632847e-05 #> scavenging interviewing #> -4.632847e-05 -4.632847e-05 #> sponsor chinese #> -4.632847e-05 -4.632847e-05 #> proving hypothalamic #> -4.632847e-05 -4.632847e-05 #> spearhead sound #> -4.632847e-05 -4.632847e-05 #> uc demonstrable #> -4.632847e-05 -4.632847e-05 #> autofluorescence pleiotropic #> -4.632847e-05 -4.632847e-05 #> conceals utilities #> -4.632847e-05 -4.632847e-05 #> scattering saha #> -4.632847e-05 -4.632847e-05 #> independence defines #> -4.632847e-05 -4.632847e-05 #> epithelia disabling #> -4.632847e-05 -4.632847e-05 #> hydrolases beltrami #> -4.632847e-05 -4.632847e-05 #> dprtmntof benzene #> -4.632847e-05 -4.632847e-05 #> adopting breadth #> -4.632847e-05 -4.632847e-05 #> highlighting evoke #> -4.632847e-05 -4.632847e-05 #> injured communicated #> -4.632847e-05 -4.632847e-05 #> histology countless #> -4.632847e-05 -4.632847e-05 #> golgi argument #> -4.632847e-05 -4.632847e-05 #> mbrs neuroanatomy #> -4.632847e-05 -4.632847e-05 #> sandfly fourthly #> -4.632847e-05 -4.632847e-05 #> unaware position #> -4.632847e-05 -4.632847e-05 #> deeper vital #> -4.632847e-05 -4.632847e-05 #> installation eliminate #> -4.632847e-05 -4.632847e-05 #> proiect penetrating #> -4.632847e-05 -4.632847e-05 #> interested ablated #> -4.632847e-05 -4.632847e-05 #> programmers parameterization #> -4.632847e-05 -4.632847e-05 #> hearts chemically #> -4.632847e-05 -4.632847e-05 #> programsrvsas govern #> -4.632847e-05 -4.632847e-05 #> bpa toppenish #> -4.632847e-05 -4.632847e-05 #> consumer extinguish #> -4.632847e-05 -4.632847e-05 #> mstcommnlyasscitdwit recipients #> -4.632847e-05 -4.632847e-05 #> dramatic holtgrave #> -4.632847e-05 -4.632847e-05 #> membership sialyltransferases #> -4.632847e-05 -4.632847e-05 #> salvage transients #> -4.632847e-05 -4.632847e-05 #> kinetics funds #> -4.632847e-05 -4.632847e-05 #> country stringent #> -4.632847e-05 -4.632847e-05 #> psychosis alveolar #> -4.632847e-05 -4.632847e-05 #> expenditure catalyzes #> -4.632847e-05 -4.632847e-05 #> consequent gab #> -4.632847e-05 -4.632847e-05 #> determines choices #> -4.632847e-05 -4.632847e-05 #> quarantine mandates #> -4.632847e-05 -4.632847e-05 #> aided theta #> -4.632847e-05 -4.632847e-05 #> participatory prominent #> -4.632847e-05 -4.632847e-05 #> landscape modular #> -4.632847e-05 -4.632847e-05 #> adjustments bag #> -4.632847e-05 -4.632847e-05 #> thrombomodulin fidelity #> -4.632847e-05 -4.632847e-05 #> professionals eariy #> -4.632847e-05 -4.632847e-05 #> working disruptive #> -4.632847e-05 -4.632847e-05 #> governed ectopic #> -4.632847e-05 -4.632847e-05 #> induces transmit #> -4.632847e-05 -4.632847e-05 #> pertorm mmip #> -4.632847e-05 -4.632847e-05 #> documents epidemiologic #> -4.632847e-05 -4.632847e-05 #> indications comments #> -4.632847e-05 -4.632847e-05 #> fabricate equip #> -4.632847e-05 -4.632847e-05 #> desig sahelian #> -4.632847e-05 -4.632847e-05 #> sole audiences #> -4.632847e-05 -4.632847e-05 #> weak desai #> -4.632847e-05 -4.632847e-05 #> rgultoryprgramstnars usefulness #> -4.632847e-05 -4.632847e-05 #> engages carcinogens #> -4.632847e-05 -4.632847e-05 #> occupations disrupt #> -4.632847e-05 -4.632847e-05 #> decay ofregltoryaffirs #> -4.632847e-05 -4.632847e-05 #> initiative escape #> -4.632847e-05 -4.632847e-05 #> glycoproteins descriptive #> -4.632847e-05 -4.632847e-05 #> evolved scientifically #> -4.632847e-05 -4.632847e-05 #> overseen channeled #> -4.632847e-05 -4.632847e-05 #> protocols wok #> -4.632847e-05 -4.632847e-05 #> sunlight constituents #> -4.632847e-05 -4.632847e-05 #> forstnarizigadre full #> -4.632847e-05 -4.632847e-05 #> developments inversely #> -4.632847e-05 -4.632847e-05 #> import axis #> -4.632847e-05 -4.632847e-05 #> epigenome validity #> -4.632847e-05 -4.632847e-05 #> neck appreciably #> 1.180665e-03 -4.632847e-05 #> intermediates wk #> -4.632847e-05 -4.632847e-05 #> label systematically #> -4.632847e-05 -4.632847e-05 #> extrasynaptic occupies #> -4.632847e-05 -4.632847e-05 #> productive lysine #> -4.632847e-05 -4.632847e-05 #> fractures suitable #> -4.632847e-05 -4.632847e-05 #> interrelationship dispose #> -4.632847e-05 -4.632847e-05 #> encountered maintained #> -4.632847e-05 -4.632847e-05 #> tl synuclein #> -4.632847e-05 -4.632847e-05 #> urgently visualize #> -4.632847e-05 -4.632847e-05 #> wider logistical #> -4.632847e-05 -4.632847e-05 #> fixation fucose #> -4.632847e-05 -4.632847e-05 #> lifespans tunnel #> -4.632847e-05 -4.632847e-05 #> giving athletes #> -4.632847e-05 -4.632847e-05 #> suffered elegans #> -4.632847e-05 -4.632847e-05 #> cement machinery #> -4.632847e-05 -4.632847e-05 #> aggressively sets #> -4.632847e-05 -4.632847e-05 #> dwelling wscmletdon #> -4.632847e-05 -4.632847e-05 #> gatekeeper stratify #> -4.632847e-05 -4.632847e-05 #> affords vaginal #> -4.632847e-05 -4.632847e-05 #> survivorship dismal #> -4.632847e-05 1.180665e-03 #> depicted thickness #> -4.632847e-05 -4.632847e-05 #> postulated loose #> -4.632847e-05 -4.632847e-05 #> reproductiv mnorc #> -4.632847e-05 -4.632847e-05 #> proramsportadrsurcs enhancements #> -4.632847e-05 -4.632847e-05 #> oeschlaeger advancements #> -4.632847e-05 -4.632847e-05 #> pool impaired #> -4.632847e-05 -4.632847e-05 #> enhancers isolate #> -4.632847e-05 -4.632847e-05 #> analog subtypes #> -4.632847e-05 -4.632847e-05 #> preserving reviewing #> -4.632847e-05 -4.632847e-05 #> similarly rogramdes #> -4.632847e-05 -4.632847e-05 #> carcinogenicity empirical #> -4.632847e-05 -4.632847e-05 #> pointing necessity #> -4.632847e-05 -4.632847e-05 #> sdt began #> -4.632847e-05 -4.632847e-05 #> proximity antigeni #> -4.632847e-05 -4.632847e-05 #> commission filled #> -4.632847e-05 -4.632847e-05 #> duties premenopause #> -4.632847e-05 -4.632847e-05 #> synergizes yu #> 1.180665e-03 -4.632847e-05 #> applicability taught #> -4.632847e-05 -4.632847e-05 #> created reu #> -4.632847e-05 -4.632847e-05 #> atypical medically #> -4.632847e-05 -4.632847e-05 #> colorectum extra #> -4.632847e-05 -4.632847e-05 #> neuropathology severe #> -4.632847e-05 -4.632847e-05 #> timelines everyday #> -4.632847e-05 -4.632847e-05 #> disrupting fnigreqestdis #> -4.632847e-05 -4.632847e-05 #> alms walls #> -4.632847e-05 -4.632847e-05 #> dsif wul #> -4.632847e-05 -4.632847e-05 #> medication moderating #> -4.632847e-05 -4.632847e-05 #> localization urbanization #> -4.632847e-05 -4.632847e-05 #> anticoagulation origins #> -4.632847e-05 -4.632847e-05 #> ursodeoxycholic enthusiastic #> -4.632847e-05 -4.632847e-05 #> unquestioned drawn #> -4.632847e-05 -4.632847e-05 #> shifts opens #> -4.632847e-05 -4.632847e-05 #> disparity radii #> -4.632847e-05 -4.632847e-05 #> circulatory tetanic #> -4.632847e-05 -4.632847e-05 #> conservation youthful #> -4.632847e-05 -4.632847e-05 #> seniors constitutes #> -4.632847e-05 -4.632847e-05 #> globally microorganisms #> -4.632847e-05 -4.632847e-05 #> multiphtoton exerts #> -4.632847e-05 -4.632847e-05 #> publica apparent #> -4.632847e-05 -4.632847e-05 #> played longevity #> -4.632847e-05 -4.632847e-05 #> outlined oscillation #> -4.632847e-05 -4.632847e-05 #> transdisciplinary myd #> -4.632847e-05 -4.632847e-05 #> session frequently #> -4.632847e-05 -4.632847e-05 #> arlene monoclonal #> -4.632847e-05 -4.632847e-05 #> clia broadest #> -4.632847e-05 -4.632847e-05 #> amplitude clinician #> -4.632847e-05 -4.632847e-05 #> days fresh #> -4.632847e-05 -4.632847e-05 #> achieving gillings #> -4.632847e-05 -4.632847e-05 #> dysregulated metstnard #> -4.632847e-05 -4.632847e-05 #> clonal recapitulates #> -4.632847e-05 1.180665e-03 #> eerl permanent #> -4.632847e-05 -4.632847e-05 #> versed dca #> -4.632847e-05 -4.632847e-05 #> indirect reeb #> -4.632847e-05 -4.632847e-05 #> cables yearly #> -4.632847e-05 -4.632847e-05 #> multifunctional gabaa #> -4.632847e-05 -4.632847e-05 #> expectancy ventricles #> -4.632847e-05 -4.632847e-05 #> firstly connected #> -4.632847e-05 -4.632847e-05 #> transactivator ucla #> -4.632847e-05 -4.632847e-05 #> absorptive roadmap #> -4.632847e-05 -4.632847e-05 #> antagonize faye #> -4.632847e-05 -4.632847e-05 #> advisor hclir #> -4.632847e-05 -4.632847e-05 #> hours tecnter #> -4.632847e-05 -4.632847e-05 #> approval filter #> -4.632847e-05 -4.632847e-05 #> rsosil cific #> -4.632847e-05 -4.632847e-05 #> moves toxoplasmic #> -4.632847e-05 -4.632847e-05 #> thirds nas #> -4.632847e-05 -4.632847e-05 #> eliminating unharmed #> -4.632847e-05 -4.632847e-05 #> geometric sequenced #> -4.632847e-05 -4.632847e-05 #> yakama respiratory #> -4.632847e-05 -4.632847e-05 #> calorie unexpectedly #> -4.632847e-05 -4.632847e-05 #> endogenous toxicologic #> -4.632847e-05 -4.632847e-05 #> dosage reassorted #> -4.632847e-05 -4.632847e-05 #> solves seminars #> -4.632847e-05 -4.632847e-05 #> obtaining fed #> -4.632847e-05 -4.632847e-05 #> insertion chief #> -4.632847e-05 -4.632847e-05 #> rearrangement lentiviral #> -4.632847e-05 -4.632847e-05 #> born macro #> -4.632847e-05 -4.632847e-05 #> proofing tilizdt #> -4.632847e-05 -4.632847e-05 #> manufacturing overview #> -4.632847e-05 -4.632847e-05 #> amphibians certify #> -4.632847e-05 -4.632847e-05 #> thousands bleeding #> -4.632847e-05 -4.632847e-05 #> aminobutyric addictive #> -4.632847e-05 -4.632847e-05 #> suspected start #> -4.632847e-05 -4.632847e-05 #> managed underage #> -4.632847e-05 -4.632847e-05 #> 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