R/topic_modeling_utilities.R
GetProbableTerms.Rd
Function extracts probable terms from a set of documents. Probable here implies more probable than in a corpus overall.
GetProbableTerms(docnames, dtm, p_terms = NULL)
A character vector of rownames of dtm for set of documents
A document term matrix of class matrix
or dgCMatrix
.
If not NULL (the default), a numeric vector representing the probability of each term in the corpus whose names correspond to colnames(dtm).
Returns a numeric vector of the format p_terms. The entries of the vectors correspond to the difference in the probability of drawing a term from the set of documents given by docnames and the probability of drawing that term from the corpus overall (p_terms).
# Load a pre-formatted dtm and topic model
data(nih_sample_topic_model)
data(nih_sample_dtm)
# documents with a topic proportion of .25 or higher for topic 2
mydocs <- rownames(nih_sample_topic_model$theta)[ nih_sample_topic_model$theta[ , 2 ] >= 0.25 ]
term_probs <- Matrix::colSums(nih_sample_dtm) / sum(Matrix::colSums(nih_sample_dtm))
GetProbableTerms(docnames = mydocs, dtm = nih_sample_dtm, p_terms = term_probs)
#> folding tosuprttedprtmnt
#> -4.632847e-05 -4.632847e-05
#> importation hd
#> -4.632847e-05 -4.632847e-05
#> civilian lysosome
#> -4.632847e-05 -4.632847e-05
#> capped intimately
#> -4.632847e-05 -4.632847e-05
#> cyclic bodies
#> -4.632847e-05 -4.632847e-05
#> awarded sf
#> -4.632847e-05 -4.632847e-05
#> centrosome boards
#> -4.632847e-05 -4.632847e-05
#> developers exploration
#> -4.632847e-05 -4.632847e-05
#> challenged mendel
#> -4.632847e-05 -4.632847e-05
#> papers embedded
#> -4.632847e-05 -4.632847e-05
#> efflux pbps
#> -4.632847e-05 -4.632847e-05
#> intellectual nelf
#> -4.632847e-05 -4.632847e-05
#> fibrillin pathologic
#> -4.632847e-05 -4.632847e-05
#> talairach xenografts
#> -4.632847e-05 -4.632847e-05
#> demonstrates book
#> -4.632847e-05 -4.632847e-05
#> equilibrium testna
#> -4.632847e-05 -4.632847e-05
#> graduated ampars
#> -4.632847e-05 -4.632847e-05
#> income exploiting
#> -4.632847e-05 -4.632847e-05
#> compositions methylated
#> -4.632847e-05 -4.632847e-05
#> qualifications prjctsmmry
#> -4.632847e-05 -4.632847e-05
#> tomographic endowed
#> -4.632847e-05 -4.632847e-05
#> oklahoma inserts
#> -4.632847e-05 -4.632847e-05
#> definitions surfaces
#> -4.632847e-05 -4.632847e-05
#> originated prb
#> -4.632847e-05 -4.632847e-05
#> questionnaire recroited
#> -4.632847e-05 -4.632847e-05
#> investigations stabilization
#> -4.632847e-05 -4.632847e-05
#> lemons fostering
#> -4.632847e-05 -4.632847e-05
#> myofilament acgih
#> -4.632847e-05 -4.632847e-05
#> rejection needing
#> -4.632847e-05 -4.632847e-05
#> separation conduits
#> -4.632847e-05 -4.632847e-05
#> manner representatives
#> -4.632847e-05 -4.632847e-05
#> micronutrient supramolecular
#> -4.632847e-05 -4.632847e-05
#> triggering immunosuppression
#> 1.180665e-03 1.180665e-03
#> budget summarize
#> -4.632847e-05 -4.632847e-05
#> discuss dividing
#> -4.632847e-05 -4.632847e-05
#> shifted adequately
#> -4.632847e-05 -4.632847e-05
#> mais heterogeneity
#> -4.632847e-05 -4.632847e-05
#> cytosolic unable
#> -4.632847e-05 -4.632847e-05
#> biologic radioiodine
#> -4.632847e-05 1.180665e-03
#> nida thompson
#> -4.632847e-05 -4.632847e-05
#> antagonizing atomic
#> -4.632847e-05 -4.632847e-05
#> covering remaining
#> -4.632847e-05 -4.632847e-05
#> repress tuition
#> -4.632847e-05 -4.632847e-05
#> conditioning upregulation
#> -4.632847e-05 1.180665e-03
#> trace rtilfo
#> -4.632847e-05 -4.632847e-05
#> sequential minimal
#> -4.632847e-05 -4.632847e-05
#> silicon forty
#> -4.632847e-05 -4.632847e-05
#> uiformispctinprogram restoration
#> -4.632847e-05 -4.632847e-05
#> pls avrifictinaditwscmltdo
#> -4.632847e-05 -4.632847e-05
#> rheumatoid rimaryregltoryrsosiilityfor
#> -4.632847e-05 -4.632847e-05
#> unfolded typing
#> -4.632847e-05 -4.632847e-05
#> presentation procedural
#> -4.632847e-05 -4.632847e-05
#> issue sustains
#> -4.632847e-05 -4.632847e-05
#> multiplying zone
#> -4.632847e-05 -4.632847e-05
#> methotrexate proteinase
#> -4.632847e-05 -4.632847e-05
#> liver asesment
#> -4.632847e-05 -4.632847e-05
#> simply stony
#> -4.632847e-05 -4.632847e-05
#> impairs downstream
#> -4.632847e-05 -4.632847e-05
#> modulatory craving
#> -4.632847e-05 -4.632847e-05
#> reach surrogate
#> -4.632847e-05 -4.632847e-05
#> ur trait
#> -4.632847e-05 -4.632847e-05
#> metsall secured
#> -4.632847e-05 -4.632847e-05
#> microstructure imprint
#> -4.632847e-05 -4.632847e-05
#> permit platelets
#> -4.632847e-05 -4.632847e-05
#> blocked harbor
#> -4.632847e-05 -4.632847e-05
#> toxic consideration
#> -4.632847e-05 -4.632847e-05
#> energetic hemagglutinin
#> -4.632847e-05 -4.632847e-05
#> participates represented
#> -4.632847e-05 -4.632847e-05
#> neuropsychological shewanellae
#> -4.632847e-05 -4.632847e-05
#> hydrolyzed plcg
#> -4.632847e-05 -4.632847e-05
#> reflect ghanaian
#> -4.632847e-05 -4.632847e-05
#> collapse mitigating
#> -4.632847e-05 -4.632847e-05
#> missing affiliated
#> -4.632847e-05 -4.632847e-05
#> esis concerns
#> -4.632847e-05 -4.632847e-05
#> latest metabolized
#> -4.632847e-05 -4.632847e-05
#> nested supervise
#> -4.632847e-05 -4.632847e-05
#> ofdairy refine
#> -4.632847e-05 -4.632847e-05
#> governance helen
#> -4.632847e-05 -4.632847e-05
#> bile mentee
#> -4.632847e-05 -4.632847e-05
#> glands udca
#> -4.632847e-05 -4.632847e-05
#> acutely anderson
#> -4.632847e-05 -4.632847e-05
#> station viability
#> -4.632847e-05 1.180665e-03
#> virally confidence
#> -4.632847e-05 -4.632847e-05
#> proficiency renovating
#> -4.632847e-05 -4.632847e-05
#> truncation glucosylceramide
#> -4.632847e-05 -4.632847e-05
#> circadian coping
#> -4.632847e-05 -4.632847e-05
#> composed elongate
#> -4.632847e-05 -4.632847e-05
#> ground dictate
#> -4.632847e-05 -4.632847e-05
#> scavenging interviewing
#> -4.632847e-05 -4.632847e-05
#> sponsor chinese
#> -4.632847e-05 -4.632847e-05
#> proving hypothalamic
#> -4.632847e-05 -4.632847e-05
#> spearhead sound
#> -4.632847e-05 -4.632847e-05
#> uc demonstrable
#> -4.632847e-05 -4.632847e-05
#> autofluorescence pleiotropic
#> -4.632847e-05 -4.632847e-05
#> conceals utilities
#> -4.632847e-05 -4.632847e-05
#> scattering saha
#> -4.632847e-05 -4.632847e-05
#> independence defines
#> -4.632847e-05 -4.632847e-05
#> epithelia disabling
#> -4.632847e-05 -4.632847e-05
#> hydrolases beltrami
#> -4.632847e-05 -4.632847e-05
#> dprtmntof benzene
#> -4.632847e-05 -4.632847e-05
#> adopting breadth
#> -4.632847e-05 -4.632847e-05
#> highlighting evoke
#> -4.632847e-05 -4.632847e-05
#> injured communicated
#> -4.632847e-05 -4.632847e-05
#> histology countless
#> -4.632847e-05 -4.632847e-05
#> golgi argument
#> -4.632847e-05 -4.632847e-05
#> mbrs neuroanatomy
#> -4.632847e-05 -4.632847e-05
#> sandfly fourthly
#> -4.632847e-05 -4.632847e-05
#> unaware position
#> -4.632847e-05 -4.632847e-05
#> deeper vital
#> -4.632847e-05 -4.632847e-05
#> installation eliminate
#> -4.632847e-05 -4.632847e-05
#> proiect penetrating
#> -4.632847e-05 -4.632847e-05
#> interested ablated
#> -4.632847e-05 -4.632847e-05
#> programmers parameterization
#> -4.632847e-05 -4.632847e-05
#> hearts chemically
#> -4.632847e-05 -4.632847e-05
#> programsrvsas govern
#> -4.632847e-05 -4.632847e-05
#> bpa toppenish
#> -4.632847e-05 -4.632847e-05
#> consumer extinguish
#> -4.632847e-05 -4.632847e-05
#> mstcommnlyasscitdwit recipients
#> -4.632847e-05 -4.632847e-05
#> dramatic holtgrave
#> -4.632847e-05 -4.632847e-05
#> membership sialyltransferases
#> -4.632847e-05 -4.632847e-05
#> salvage transients
#> -4.632847e-05 -4.632847e-05
#> kinetics funds
#> -4.632847e-05 -4.632847e-05
#> country stringent
#> -4.632847e-05 -4.632847e-05
#> psychosis alveolar
#> -4.632847e-05 -4.632847e-05
#> expenditure catalyzes
#> -4.632847e-05 -4.632847e-05
#> consequent gab
#> -4.632847e-05 -4.632847e-05
#> determines choices
#> -4.632847e-05 -4.632847e-05
#> quarantine mandates
#> -4.632847e-05 -4.632847e-05
#> aided theta
#> -4.632847e-05 -4.632847e-05
#> participatory prominent
#> -4.632847e-05 -4.632847e-05
#> landscape modular
#> -4.632847e-05 -4.632847e-05
#> adjustments bag
#> -4.632847e-05 -4.632847e-05
#> thrombomodulin fidelity
#> -4.632847e-05 -4.632847e-05
#> professionals eariy
#> -4.632847e-05 -4.632847e-05
#> working disruptive
#> -4.632847e-05 -4.632847e-05
#> governed ectopic
#> -4.632847e-05 -4.632847e-05
#> induces transmit
#> -4.632847e-05 -4.632847e-05
#> pertorm mmip
#> -4.632847e-05 -4.632847e-05
#> documents epidemiologic
#> -4.632847e-05 -4.632847e-05
#> indications comments
#> -4.632847e-05 -4.632847e-05
#> fabricate equip
#> -4.632847e-05 -4.632847e-05
#> desig sahelian
#> -4.632847e-05 -4.632847e-05
#> sole audiences
#> -4.632847e-05 -4.632847e-05
#> weak desai
#> -4.632847e-05 -4.632847e-05
#> rgultoryprgramstnars usefulness
#> -4.632847e-05 -4.632847e-05
#> engages carcinogens
#> -4.632847e-05 -4.632847e-05
#> occupations disrupt
#> -4.632847e-05 -4.632847e-05
#> decay ofregltoryaffirs
#> -4.632847e-05 -4.632847e-05
#> initiative escape
#> -4.632847e-05 -4.632847e-05
#> glycoproteins descriptive
#> -4.632847e-05 -4.632847e-05
#> evolved scientifically
#> -4.632847e-05 -4.632847e-05
#> overseen channeled
#> -4.632847e-05 -4.632847e-05
#> protocols wok
#> -4.632847e-05 -4.632847e-05
#> sunlight constituents
#> -4.632847e-05 -4.632847e-05
#> forstnarizigadre full
#> -4.632847e-05 -4.632847e-05
#> developments inversely
#> -4.632847e-05 -4.632847e-05
#> import axis
#> -4.632847e-05 -4.632847e-05
#> epigenome validity
#> -4.632847e-05 -4.632847e-05
#> neck appreciably
#> 1.180665e-03 -4.632847e-05
#> intermediates wk
#> -4.632847e-05 -4.632847e-05
#> label systematically
#> -4.632847e-05 -4.632847e-05
#> extrasynaptic occupies
#> -4.632847e-05 -4.632847e-05
#> productive lysine
#> -4.632847e-05 -4.632847e-05
#> fractures suitable
#> -4.632847e-05 -4.632847e-05
#> interrelationship dispose
#> -4.632847e-05 -4.632847e-05
#> encountered maintained
#> -4.632847e-05 -4.632847e-05
#> tl synuclein
#> -4.632847e-05 -4.632847e-05
#> urgently visualize
#> -4.632847e-05 -4.632847e-05
#> wider logistical
#> -4.632847e-05 -4.632847e-05
#> fixation fucose
#> -4.632847e-05 -4.632847e-05
#> lifespans tunnel
#> -4.632847e-05 -4.632847e-05
#> giving athletes
#> -4.632847e-05 -4.632847e-05
#> suffered elegans
#> -4.632847e-05 -4.632847e-05
#> cement machinery
#> -4.632847e-05 -4.632847e-05
#> aggressively sets
#> -4.632847e-05 -4.632847e-05
#> dwelling wscmletdon
#> -4.632847e-05 -4.632847e-05
#> gatekeeper stratify
#> -4.632847e-05 -4.632847e-05
#> affords vaginal
#> -4.632847e-05 -4.632847e-05
#> survivorship dismal
#> -4.632847e-05 1.180665e-03
#> depicted thickness
#> -4.632847e-05 -4.632847e-05
#> postulated loose
#> -4.632847e-05 -4.632847e-05
#> reproductiv mnorc
#> -4.632847e-05 -4.632847e-05
#> proramsportadrsurcs enhancements
#> -4.632847e-05 -4.632847e-05
#> oeschlaeger advancements
#> -4.632847e-05 -4.632847e-05
#> pool impaired
#> -4.632847e-05 -4.632847e-05
#> enhancers isolate
#> -4.632847e-05 -4.632847e-05
#> analog subtypes
#> -4.632847e-05 -4.632847e-05
#> preserving reviewing
#> -4.632847e-05 -4.632847e-05
#> similarly rogramdes
#> -4.632847e-05 -4.632847e-05
#> carcinogenicity empirical
#> -4.632847e-05 -4.632847e-05
#> pointing necessity
#> -4.632847e-05 -4.632847e-05
#> sdt began
#> -4.632847e-05 -4.632847e-05
#> proximity antigeni
#> -4.632847e-05 -4.632847e-05
#> commission filled
#> -4.632847e-05 -4.632847e-05
#> duties premenopause
#> -4.632847e-05 -4.632847e-05
#> synergizes yu
#> 1.180665e-03 -4.632847e-05
#> applicability taught
#> -4.632847e-05 -4.632847e-05
#> created reu
#> -4.632847e-05 -4.632847e-05
#> atypical medically
#> -4.632847e-05 -4.632847e-05
#> colorectum extra
#> -4.632847e-05 -4.632847e-05
#> neuropathology severe
#> -4.632847e-05 -4.632847e-05
#> timelines everyday
#> -4.632847e-05 -4.632847e-05
#> disrupting fnigreqestdis
#> -4.632847e-05 -4.632847e-05
#> alms walls
#> -4.632847e-05 -4.632847e-05
#> dsif wul
#> -4.632847e-05 -4.632847e-05
#> medication moderating
#> -4.632847e-05 -4.632847e-05
#> localization urbanization
#> -4.632847e-05 -4.632847e-05
#> anticoagulation origins
#> -4.632847e-05 -4.632847e-05
#> ursodeoxycholic enthusiastic
#> -4.632847e-05 -4.632847e-05
#> unquestioned drawn
#> -4.632847e-05 -4.632847e-05
#> shifts opens
#> -4.632847e-05 -4.632847e-05
#> disparity radii
#> -4.632847e-05 -4.632847e-05
#> circulatory tetanic
#> -4.632847e-05 -4.632847e-05
#> conservation youthful
#> -4.632847e-05 -4.632847e-05
#> seniors constitutes
#> -4.632847e-05 -4.632847e-05
#> globally microorganisms
#> -4.632847e-05 -4.632847e-05
#> multiphtoton exerts
#> -4.632847e-05 -4.632847e-05
#> publica apparent
#> -4.632847e-05 -4.632847e-05
#> played longevity
#> -4.632847e-05 -4.632847e-05
#> outlined oscillation
#> -4.632847e-05 -4.632847e-05
#> transdisciplinary myd
#> -4.632847e-05 -4.632847e-05
#> session frequently
#> -4.632847e-05 -4.632847e-05
#> arlene monoclonal
#> -4.632847e-05 -4.632847e-05
#> clia broadest
#> -4.632847e-05 -4.632847e-05
#> amplitude clinician
#> -4.632847e-05 -4.632847e-05
#> days fresh
#> -4.632847e-05 -4.632847e-05
#> achieving gillings
#> -4.632847e-05 -4.632847e-05
#> dysregulated metstnard
#> -4.632847e-05 -4.632847e-05
#> clonal recapitulates
#> -4.632847e-05 1.180665e-03
#> eerl permanent
#> -4.632847e-05 -4.632847e-05
#> versed dca
#> -4.632847e-05 -4.632847e-05
#> indirect reeb
#> -4.632847e-05 -4.632847e-05
#> cables yearly
#> -4.632847e-05 -4.632847e-05
#> multifunctional gabaa
#> -4.632847e-05 -4.632847e-05
#> expectancy ventricles
#> -4.632847e-05 -4.632847e-05
#> firstly connected
#> -4.632847e-05 -4.632847e-05
#> transactivator ucla
#> -4.632847e-05 -4.632847e-05
#> absorptive roadmap
#> -4.632847e-05 -4.632847e-05
#> antagonize faye
#> -4.632847e-05 -4.632847e-05
#> advisor hclir
#> -4.632847e-05 -4.632847e-05
#> hours tecnter
#> -4.632847e-05 -4.632847e-05
#> approval filter
#> -4.632847e-05 -4.632847e-05
#> rsosil cific
#> -4.632847e-05 -4.632847e-05
#> moves toxoplasmic
#> -4.632847e-05 -4.632847e-05
#> thirds nas
#> -4.632847e-05 -4.632847e-05
#> eliminating unharmed
#> -4.632847e-05 -4.632847e-05
#> geometric sequenced
#> -4.632847e-05 -4.632847e-05
#> yakama respiratory
#> -4.632847e-05 -4.632847e-05
#> calorie unexpectedly
#> -4.632847e-05 -4.632847e-05
#> endogenous toxicologic
#> -4.632847e-05 -4.632847e-05
#> dosage reassorted
#> -4.632847e-05 -4.632847e-05
#> solves seminars
#> -4.632847e-05 -4.632847e-05
#> obtaining fed
#> -4.632847e-05 -4.632847e-05
#> insertion chief
#> -4.632847e-05 -4.632847e-05
#> rearrangement lentiviral
#> -4.632847e-05 -4.632847e-05
#> born macro
#> -4.632847e-05 -4.632847e-05
#> proofing tilizdt
#> -4.632847e-05 -4.632847e-05
#> manufacturing overview
#> -4.632847e-05 -4.632847e-05
#> amphibians certify
#> -4.632847e-05 -4.632847e-05
#> thousands bleeding
#> -4.632847e-05 -4.632847e-05
#> aminobutyric addictive
#> -4.632847e-05 -4.632847e-05
#> suspected start
#> -4.632847e-05 -4.632847e-05
#> managed underage
#> -4.632847e-05 -4.632847e-05
#> equivalent occupancy
#> -4.632847e-05 -4.632847e-05
#> uninfected um
#> -4.632847e-05 -4.632847e-05
#> outward subtype
#> -4.632847e-05 -4.632847e-05
#> knockdown infiltration
#> -4.632847e-05 -4.632847e-05
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#> [ reached getOption("max.print") -- omitted 4210 entries ]